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Alfaro AC, Nguyen TV, Mellow D (2019) A metabolomics approach to assess the effect of storage conditions on metabolic processes of New Zealand surf clam (Crassula aequilatera). Aquaculture Volume 498 315:321  https://doi.org/10.1016/j.aquaculture.2018.08.065

Delorme NJ, Schmidt AJ, Zamora LN, Burritt DJ, Ragg NLC. (2021). A new method to localise and quantify oxidative stress in live juvenile mussels. Biology Open https://doi.org/10.1242/bio.059030

King N, Ragg NLC, Vignier J. 2021.  A practical manual for the hatchery production of Greenshell mussel spat.  Nelson: Cawthron Institute. Cawthron Report 3644. Prepared for Te Huata Research Ltd. 

Cahill PL, Atalah J, Cunningham S, Day A, Fletcher L, South P, Forrest B, Hopkins G (2021). Acetic acid immersion – a reactive pest treatment for bivalve aquaculture.  Aquaculture. https://doi.org/10.1016/j.aquaculture.2020.736173

Dezfooli SM. Nguyen TV, Young T, Gutierrez-Maddox N, Alfaro AC.  (2023) An evaluation of the growth and immunity of New Zealand black-footed abalone (Haliotis iris) treated with encapsulated feed and probiotics.  Animal Feed Science and Technology. https://doi.org/10.1016/j.anifeedsci.2023.115639

Lovett B, Cahill P, Fletcher L, Cunningham S, Davidson I. (2024) Anthropogenic Vector Ecology and Management to Combat Disease Spread in Aquaculture. Environmental Management 73:895–912. https://doi.org/10.1007/s00267-023-01932-8

Nguyen TV., Alfaro AC (2019).  Applications of flow cytometry in molluscan immunology: current status and trends.  Fish and Shellfish Immunology Volume 94: 239-248.  https://doi.org/10.1016/j.fsi.2019.09.008

Atalah J, Fletcher L, Davidson I, South P, Forrest B (2020). Artificial habitat and biofouling species distributions in an aquaculture seascape. https://doi.org/10.3354/aei00380 

Kijas JW, Gutierrez AP, Houston RD, McWilliam S, Bean TP, Soyano K, Symonds JE, King N, Lind C, Kube P (2019).  Assessment of genetic diversity and population structure in cultured Australian Pacific oysters.  Animal Genetics 50(6): 686-694. https://doi.org/10.1111/age.12845

Elvines DM, Hopkins GA, McLeod CK, Ross DJ, Ericson JA, Ragg NLC, Copedo JS, White CA. (2024) Assimilation of fish farm wastes by the ecosystem engineering bivalve Atrina zelandica. Aquaculture Environment Interactions 16:115-131. https://doi.org/10.3354/aei00475

South PM. 2019.  Background information for six taxa commonly found on mussel spat ropes in the Marlborough Sounds, New Zealand. Nelson: Cawthron Institute. Cawthron Report No. 3373. 

French AD, Ragg NLC, Ericson JA, Goodwin E, Mc Dougall D, Vignier J (2021). Balancing essential and non-essential metal bioavailability during hatchery rearing of Greenshell mussel (Perna canaliculus) larvae.  Ecotoxicology and Environmental Safety. https://doi.org/10.1016/j.ecoenv.2021.112194

Vignier J, Ragg NLC, Ericson JA (2021) Balancing essential and non-essential metal bioavailability during hatchery rearing of Greenshell mussel (Perna canaliculus) larvae.  Ecotoxicology and Environmental Safety.  https://doi.org/10.1016/j.ecoenv.2021.112194

Sharma SS, Venter L, Frost EJ, Alfaro AC, Ragg NLC, Zamora LN. (2023) Behavioural and physiological responses of juvenile geoduck (Panopea zelandica) following acute thermal stress. Comparative Biochemistry and Physiology, Part B 269, 110892. https://doi.org/10.1016/j.cbpb.2023.110892

Cunningham S, South P, Cahill P. 2020. Biosecurity considerations for farming non-native seaweeds: a case study of Undaria pinnatifida in New Zealand. Nelson: Cawthron Institute. Cawthron Report No. 3395. Prepared for Ministry of Business, Innovation and Employment.  

Toone TA, Hillman JR, South PM, Benjamin ED, Handley S, Jeffs AG.  (2023). Bottlenecks and barriers: Patterns of abundance in early mussel life stages reveal a potential obstacle to reef recovery.  Aquatic Conservation: Marine and Freshwater Ecosystems. https://doi.org/10.1002/aqc.3979

Hopkins G, Cahill P, Pine M. 2019. Bubble stream system investigations. Nelson: Cawthron Institute. Cawthron Report No. 3352. Prepared for Auckland Council. 

Thomsen M, South PM, Tait L, Schiel D. (2021) Cascading impacts of earthquakes and extreme heatwaves have destroyed populations of an iconic marine foundation species. Diversity and Distributions. https://doi.org/10.1111/ddi.13407

Trotter AJ, Vignier J, Wilson TK, Douglas M, Adams SL, King N, Cunningham MP, Carter CG, Boudry P, Petton B, Dégremont L, Smith GG, Pernet F (2021). Case study of vertical transmission of Ostreid herpesvirus-1 in Pacific oysters and biosecurity management based on epidemiological data from French, New Zealand and Australian hatchery-propagated seed. Aquaculture Research. https://doi.org/10.1111/are.15219

Rolton A,  Champeau O, Barrick, Boundy M, Tremblay L, Vignier J. (2022) Characterization of the effects of triclosan on sperm and embryos of Mytilus and Perna mussel species. Aquatic Toxicology 245, 106107. https://doi.org/10.1016/j.aquatox.2022.106107